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Commit d0b0b0ce authored by Nikos Pappas's avatar Nikos Pappas
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remove email address from download_genomes, fix directory output

parent 18060c15
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......@@ -95,18 +95,16 @@ rule download_genomes:
input:
genomes_accessions = rules.process_uniprot.output.genomes_accessions
output:
genomes_gb = "results/interaction_datasets/05_interaction_datasets/genomes.gb"
genomes_gb = "results/interaction_datasets/05_genomes/genomes.gb"
log:
"results/logs/construct_datasets/download_genomes.log"
params:
email = config.get('email')
conda:
"../envs/pvogs.yml"
shell:
"python workflow/scripts/download_genomes.py "
"-i {input.genomes_accessions} "
"-o {output.genomes_gb} "
"-e {params.email} &>{log}"
"&>{log}"
rule extract_proteins_from_genomes:
input:
......
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