diff --git a/workflow/rules/construct_datasets.smk b/workflow/rules/construct_datasets.smk index a71612091568a5ac45810d3420927e6a25b52576..37a0dbc0db4e069b5e1b34a9ea4d2c40b5dd0df0 100644 --- a/workflow/rules/construct_datasets.smk +++ b/workflow/rules/construct_datasets.smk @@ -95,18 +95,16 @@ rule download_genomes: input: genomes_accessions = rules.process_uniprot.output.genomes_accessions output: - genomes_gb = "results/interaction_datasets/05_interaction_datasets/genomes.gb" + genomes_gb = "results/interaction_datasets/05_genomes/genomes.gb" log: "results/logs/construct_datasets/download_genomes.log" - params: - email = config.get('email') conda: "../envs/pvogs.yml" shell: "python workflow/scripts/download_genomes.py " "-i {input.genomes_accessions} " "-o {output.genomes_gb} " - "-e {params.email} &>{log}" + "&>{log}" rule extract_proteins_from_genomes: input: