Commits · master · Nikos Pappas / pvogs_function

Sep 09, 2021
- add notebook for fig 2 · c4e6bab5
  Nikos Pappas authored 3 years ago
  
  c4e6bab5
Mar 04, 2021
- flag data input as ancient so do no trigger · 258f84e8
  Nikos Pappas authored 4 years ago
  
  258f84e8
Mar 03, 2021
- update annotations figures · 1289850b
  Nikos Pappas authored 4 years ago
  
  1289850b
- update image production · 03624795
  Nikos Pappas authored 4 years ago
  
  03624795
- multiple figure formats · b23e93eb
  Nikos Pappas authored 4 years ago
  
  b23e93eb
Mar 02, 2021
- proper auc to AUROC · 1542ec49
  Nikos Pappas authored 4 years ago
  
  1542ec49
- Revert "auc to AUROC" · 3fe64346
  Nikos Pappas authored 4 years ago
  
  This reverts commit 63eae420
  3fe64346
- auc to AUROC · 63eae420
  Nikos Pappas authored 4 years ago
  
  63eae420
- added supplement table 1 · 7ec9c8e9
  Nikos Pappas authored 4 years ago
  
  7ec9c8e9
Mar 01, 2021
- data do no trigger full execution · eead43bc
  Nikos Pappas authored 4 years ago
  
  eead43bc
- fix missing dict definition · a2a92483
  Nikos Pappas authored 4 years ago
  
  a2a92483
- remove redundant print · d5b2419e
  Nikos Pappas authored 4 years ago
  
  d5b2419e
- remove empty line · c6aa1b06
  Nikos Pappas authored 4 years ago
  
  c6aa1b06
- fix key for value retrieval · d0a6fe58
  Nikos Pappas authored 4 years ago
  
  d0a6fe58
- output to log files · dc63885e
  Nikos Pappas authored 4 years ago
  
  dc63885e
- update slicing to handle bitscores and evalues · 94fe8f4d
  Nikos Pappas authored 4 years ago
  
  94fe8f4d
- report bitscore and evalues for hits · 36213934
  Nikos Pappas authored 4 years ago
  
  36213934
Feb 04, 2021
- include the figure in the workflow · c5cb2e21
  Nikos Pappas authored 4 years ago
  
  c5cb2e21
- added calculations for pvogs annotations · ee19d5ee
  Nikos Pappas authored 4 years ago
  
  ee19d5ee
- change pallettes to colorblind · d4f88e2c
  Nikos Pappas authored 4 years ago
  
  d4f88e2c
- adjust notebook rule · 8f85f171
  Nikos Pappas authored 4 years ago
  
  8f85f171
- remove old notebook · a3ce4623
  Nikos Pappas authored 4 years ago
  
  a3ce4623
- update analysis notebook · 331b8a69
  Nikos Pappas authored 4 years ago
  
  331b8a69
Feb 03, 2021
- Revert "change the notebook" · fa8e9d96
  Nikos Pappas authored 4 years ago
  
  This reverts commit 4d4bb547
  fa8e9d96
- change the notebook · 4d4bb547
  Nikos Pappas authored 4 years ago
  
  4d4bb547
- update seaborn only · dd412876
  Nikos Pappas authored 4 years ago
  
  dd412876
- reformatting, cleanup · 8bfaaafc
  Nikos Pappas authored 4 years ago
  
  8bfaaafc
- tab reformatting · f4f29eea
  Nikos Pappas authored 4 years ago
  
  f4f29eea
- tab formatting · f3242399
  Nikos Pappas authored 4 years ago
  
  f3242399
- update seaborn, full specs for jupyter env · 38cf98a6
  Nikos Pappas authored 4 years ago
  
  38cf98a6
Sep 18, 2020
- make predict rule threads configurable · bd6d9a28
  Nikos Pappas authored 4 years ago
  
  bd6d9a28
- hide logs for master snakefile too · 4606b975
  Nikos Pappas authored 4 years ago
  
  4606b975
- hide logs dir to .logs · 7e2e18c9
  Nikos Pappas authored 4 years ago
  
  7e2e18c9
Sep 15, 2020
- add reference to github issue · 4c0d48b7
  Nikos Pappas authored 4 years ago
  
  4c0d48b7
- fix qt error when plotting with no screen available · fd44d639
  Nikos Pappas authored 4 years ago
  
  fd44d639
Sep 10, 2020
- added final result rule · e58c4bcf
  Nikos Pappas authored 4 years ago
  
  e58c4bcf
- added script for joining predictions with annotations · c59418d2
  Nikos Pappas authored 4 years ago
  
  c59418d2
Sep 09, 2020
- make threads configurable · 3b047152
  Nikos Pappas authored 4 years ago
  
  3b047152
- fix deprecated use of function for figure S3 labels · 805450f5
  Nikos Pappas authored 4 years ago
  
  805450f5
Sep 08, 2020
- added figure S3 · c2f3d14d
  Nikos Pappas authored 4 years ago
  
  c2f3d14d