the workflow

workflow/Snakefile

workflow/envs/pvogs.yml

workflow/envs/pvogs_jupy.yml

workflow/notebooks/data_processing.py.ipynb

workflow/rules/construct_datasets.smk

workflow/rules/envs/zenodo.yml

workflow/rules/get_data.smk

workflow/rules/pre_process.smk

workflow/scripts/calculate_all_scores.py

workflow/scripts/download_genomes.py

workflow/scripts/extract_proteins_from_gb.py

workflow/scripts/fastani_mat_to_square.py

workflow/scripts/filter_intact.py

workflow/scripts/get_uniprot_ids.py

workflow/scripts/make_protein_combos.py

workflow/scripts/predict.py

workflow/scripts/process_annotations.py

workflow/scripts/process_comparem.py

workflow/scripts/process_uniprot.py

workflow/scripts/query_uniprot.py