Update paths and dependencies

backend/src/preprocessing.py

@@ -90,6 +90,7 @@ class Preprocessor:
         "1"
 
         """
+        self.dir_cache.mkdir(parents=True, exist_ok=True)
         self.path_cached_data_npy_ = self.dir_cache / f"{self.dataset}_cached_{window_size}.npy"
         if not self.path_cached_data_npy_.is_file():
             data = self._load_data()

config.yml

@@ -4,4 +4,4 @@ reload: false
 
 # Specific configuration file
 #path_config_yml: D:\Projects\pseudo\experiments\configs\config_egr.yml
-path_config_yml: D:\Projects\pseudo\experiments\configs\config_eeg_eye_state.yml
\ No newline at end of file
+path_config_yml: ..\experiments\configs\config_eeg_eye_state.yml
\ No newline at end of file

environment.yml

@@ -9,12 +9,14 @@ dependencies:
   - dask[dataframe]
   - flask
   - flask_cors
+  - h5py
   - jupyter
   - matplotlib
   - numpy
   - orjson
   - pandas
   - pip
+  - pytables
   - scikit-learn
   - tslearn
   - pip:

experiments/configs/config_eeg_eye_state.yml

 ---
 dataset: eeg_eye_state
-path_data_hdf: D:\Projects\pseudo\data\eeg_eye_state\eeg_eye_state.hdf
-path_meta_json: D:\Projects\pseudo\data\eeg_eye_state\metadata.json
+path_data_hdf: ..\data\eeg_eye_state\eeg_eye_state.hdf
+path_meta_json: ..\data\eeg_eye_state\metadata.json
 channels:
   - time
   - AF3
   - F7
   - F3
   - FC5
-  - T7
-  - P7
-  - O1
-  - O2
-  - P8
-  - T8
-  - FC6
-  - F4
-  - F8
-  - AF4
+#  - T7
+#  - P7
+#  - O1
+#  - O2
+#  - P8
+#  - T8
+#  - FC6
+#  - F4
+#  - F8
+#  - AF4
 dir_in_hdf: resampled
 dir_cache: cache\