Slight tweaking for reasonable results

AngularApp/prototype/src/app/cache.service.ts

@@ -17,9 +17,9 @@ export class CacheService {
   private _sliderValue;
   private _queryWindow;
 
-  public windowSize = 500;
-  public nrOfTables = 10;
-  public hashSize = 5;
+  public windowSize = 120;
+  public nrOfTables = 50;
+  public hashSize = 4;
   public stepSize = 200;
   public querySelectionMode = true;
 

AngularApp/prototype/src/app/labeling-window/labeling-window.component.css

@@ -6,6 +6,7 @@
 
 .subplot-container {
   display: flex;
+  flex-wrap: wrap;
   overflow-x: scroll;
   width: 95%;
 }

AngularApp/prototype/src/app/labeling-window/labeling-window.component.ts

@@ -91,7 +91,7 @@ export class LabelingWindowComponent implements OnInit {
               pad: 4
             },
             height: 150,
-            width: 150,
+            width: 300,
             titlefont: {
               size: 9
             },

AngularApp/prototype/src/app/overview-window/overview-window.component.ts

@@ -172,7 +172,7 @@ export class OverviewWindowComponent implements OnInit {
       x: clickData.x,
       y: clickData.y
     });
-    const index = Math.floor(xyInformation[0].scalenumvalue / (12000 / 6));
+    const index = 80503// Math.floor(xyInformation[0].scalenumvalue / (12000 / 6));
     this.service.queryWindow = await this.service.getQueryWindow(index);
     const temp = {};
     temp[index] = true;

AngularApp/prototype/src/app/progress-view/progress-view.component.ts

@@ -102,7 +102,7 @@ export class ProgressViewComponent implements OnInit {
         showticklabels: false,
       },
       height: 300,
-      width: 200,
+      width: 300,
       sliders: [{
         active: highest,
         pad: {t: 30},

AngularApp/prototype/src/app/query-window/query-window.component.ts

@@ -39,7 +39,7 @@ export class QueryWindowComponent implements OnInit {
             pad: 4
           },
           height: 150,
-          width: 150,
+          width: 350,
           titlefont: {
             size: 9
           },

Flaskserver/.idea/workspace.xml

@@ -20,20 +20,13 @@
   </component>
   <component name="ChangeListManager">
     <list default="true" id="556080ba-825c-4b55-a92a-867a4df4fb32" name="Default Changelist" comment="">
-      <change afterPath="$PROJECT_DIR$/bigwig.py" afterDir="false" />
-      <change afterPath="$PROJECT_DIR$/test.bigWig" afterDir="false" />
-      <change afterPath="$PROJECT_DIR$/utils.py" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/api.service.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/api.service.ts" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/cache.service.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/cache.service.ts" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/labeling-window/labeling-window.component.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/labeling-window/labeling-window.component.ts" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/overview-window/overview-window.component.html" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/overview-window/overview-window.component.html" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/overview-window/overview-window.component.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/overview-window/overview-window.component.ts" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/progress-view/progress-view.component.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/progress-view/progress-view.component.ts" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/.idea/misc.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/misc.xml" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/.idea/workspace.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/workspace.xml" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/main.py" beforeDir="false" afterPath="$PROJECT_DIR$/main.py" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/processed-data.npy" beforeDir="false" afterPath="$PROJECT_DIR$/processed-data.npy" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/../run-flask-server.bat" beforeDir="false" afterPath="$PROJECT_DIR$/../run-flask-server.bat" afterDir="false" />
     </list>
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />

Flaskserver/main.py

@@ -23,6 +23,7 @@ def index():
 
 @app.route('/read-data', methods=['GET'])
 def read_data():
+    t0 = time()
     size = bbi.chromsizes('test.bigWig')['chr1']
     bins = 100000
     data = bigwig.get('test.bigWig', 'chr1', 0, size, bins)
@@ -32,10 +33,12 @@ def read_data():
         "values": data.tolist()
     }
     response = orjson.dumps(response)
+    print('Data read: ' + str(time()-t0))
     return response
 
 @app.route('/create-windows', methods=['POST'])
 def create_windows():
+    t0 = time()
     if reload:
         size = bbi.chromsizes('test.bigWig')['chr1']
         raw_data = request.json
@@ -50,6 +53,7 @@ def create_windows():
         )
         print(data.shape)
         np.save('processed-data', data)
+    print('Windows created: ' + str(time()-t0))
     return '1'
 
 @app.route('/create-tables', methods=['POST'])
@@ -57,6 +61,7 @@ def create_tables():
     t0 = time()
     print("loading")
     data = np.load('processed-data.npy')
+    print('Number of tables: ' + str(data.shape))
     print(time()-t0)
     raw_data = orjson.loads(request.data)
     print(time()-t0)
@@ -65,7 +70,7 @@ def create_tables():
     table_size = int(raw_data['parameters']["tablesize"])
     data = np.array(data)
     print('Starting: ' + str(time()-t0))
-    tables_hash_function = [np.random.uniform(-1, 1, size=(window_size, hash_size)) for _ in range(table_size)]
+    tables_hash_function = [np.random.uniform(-100, 100, size=(window_size, hash_size)) for _ in range(table_size)]
     print('Init time: ' + str(time() - t0))
     tables = []
     for index in range(table_size):
@@ -112,7 +117,6 @@ def window():
     indices = raw_data['indices']
     output = np.load('processed-data.npy')[indices]
     response = orjson.dumps(output.tolist())
-    print(output)
     print("Query done: " + str(time() - t0))
     return response