diff --git a/AngularApp/prototype/src/app/labeling-window/labeling-window.component.html b/AngularApp/prototype/src/app/labeling-window/labeling-window.component.html
index 9d3feecdd86797d0996be90bb9d28c410dc074ab..2bca5baec00c8f58b8c54943c2ac36ffeb2107e7 100644
--- a/AngularApp/prototype/src/app/labeling-window/labeling-window.component.html
+++ b/AngularApp/prototype/src/app/labeling-window/labeling-window.component.html
@@ -10,7 +10,7 @@
</div>
</div>
<div class="button-holder">
- <button *ngIf="show" (click)="updateQuery()" class="train-button">Query</button>
+<!-- <button *ngIf="show" (click)="updateQuery()" class="train-button">Query</button>-->
<button *ngIf="show" (click)="train()" class="train-button">Train</button>
</div>
</div>
diff --git a/AngularApp/prototype/src/app/overview-window/overview-window.component.ts b/AngularApp/prototype/src/app/overview-window/overview-window.component.ts
index 25f7de62ee4419e0e3c8841f1d4c5f16a523469e..9e4fa626bd6e5a4bfe6612a567619fdedee80376 100644
--- a/AngularApp/prototype/src/app/overview-window/overview-window.component.ts
+++ b/AngularApp/prototype/src/app/overview-window/overview-window.component.ts
@@ -28,7 +28,7 @@ export class OverviewWindowComponent implements OnInit {
async initializePlot() {
this.state.queryWindow = undefined;
- this.debugClicked();
+ // this.debugClicked();
this.data = [];
for (let i = 0; i < this.state.rawData.values.length; i++) {
this.data.push([this.state.rawData.index[i], this.state.rawData.values[i]]);
@@ -155,6 +155,8 @@ export class OverviewWindowComponent implements OnInit {
return;
}
this.state.querySelectionMode = false;
+ await this.debugClicked();
+ return;
const xyInformation = zingchart.exec('zingchart-ng-1', 'getxyinfo', {
x: clickData.x,
y: clickData.y
diff --git a/AngularApp/prototype/src/app/table-overview/table-overview.component.ts b/AngularApp/prototype/src/app/table-overview/table-overview.component.ts
index f21334c14fba42154f72b0e13af7f783dcf30816..24df3bcf865ce20f8dfa2bbaa078360d7aaa05c6 100644
--- a/AngularApp/prototype/src/app/table-overview/table-overview.component.ts
+++ b/AngularApp/prototype/src/app/table-overview/table-overview.component.ts
@@ -12,8 +12,8 @@ export class TableOverviewComponent implements OnInit {
constructor(private state: StateService) { }
ngOnInit(): void {
- this.state.onNewTable.subscribe(() => this.createHistograms());
- this.state.onNewTableInfo.subscribe(() => this.createPrototypes());
+ // this.state.onNewTable.subscribe(() => this.createHistograms());
+ // this.state.onNewTableInfo.subscribe(() => this.createPrototypes());
}
createPrototypes(): void {
diff --git a/Flaskserver/.idea/workspace.xml b/Flaskserver/.idea/workspace.xml
index 6be48e271bc7b5abbd6152809252007128f3a486..abed6cc1b54a8e45db0f8f415442cfa7753a65a5 100644
--- a/Flaskserver/.idea/workspace.xml
+++ b/Flaskserver/.idea/workspace.xml
@@ -20,1034 +20,17 @@
</component>
<component name="ChangeListManager">
<list default="true" id="556080ba-825c-4b55-a92a-867a4df4fb32" name="Default Changelist" comment="">
- <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/state.service.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/state.service.ts" afterDir="false" />
+ <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/labeling-window/labeling-window.component.html" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/labeling-window/labeling-window.component.html" afterDir="false" />
+ <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/overview-window/overview-window.component.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/overview-window/overview-window.component.ts" afterDir="false" />
+ <change beforePath="$PROJECT_DIR$/../AngularApp/prototype/src/app/table-overview/table-overview.component.ts" beforeDir="false" afterPath="$PROJECT_DIR$/../AngularApp/prototype/src/app/table-overview/table-overview.component.ts" afterDir="false" />
<change beforePath="$PROJECT_DIR$/.idea/workspace.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/workspace.xml" afterDir="false" />
+ <change beforePath="$PROJECT_DIR$/1.csv" beforeDir="false" />
+ <change beforePath="$PROJECT_DIR$/DailyDelhiClimateTrain.csv" beforeDir="false" />
<change beforePath="$PROJECT_DIR$/_lsh.cpython-38-x86_64-linux-gnu.so" beforeDir="false" afterPath="$PROJECT_DIR$/_lsh.cpython-38-x86_64-linux-gnu.so" afterDir="false" />
- <change beforePath="$PROJECT_DIR$/bigwig.py" beforeDir="false" afterPath="$PROJECT_DIR$/bigwig.py" afterDir="false" />
<change beforePath="$PROJECT_DIR$/build/lib.linux-x86_64-3.8/_lsh.cpython-38-x86_64-linux-gnu.so" beforeDir="false" afterPath="$PROJECT_DIR$/build/lib.linux-x86_64-3.8/_lsh.cpython-38-x86_64-linux-gnu.so" afterDir="false" />
- <change beforePath="$PROJECT_DIR$/build/temp.linux-x86_64-3.8/Dylan/lsh-fast/_lsh.o" beforeDir="false" afterPath="$PROJECT_DIR$/build/temp.linux-x86_64-3.8/Dylan/lsh-fast/_lsh.o" afterDir="false" />
- <change beforePath="$PROJECT_DIR$/build/temp.linux-x86_64-3.8/Dylan/lsh-fast/lsh.o" beforeDir="false" afterPath="$PROJECT_DIR$/build/temp.linux-x86_64-3.8/Dylan/lsh-fast/lsh.o" afterDir="false" />
<change beforePath="$PROJECT_DIR$/main.py" beforeDir="false" afterPath="$PROJECT_DIR$/main.py" afterDir="false" />
+ <change beforePath="$PROJECT_DIR$/setup.py" beforeDir="false" afterPath="$PROJECT_DIR$/setup.py" afterDir="false" />
<change beforePath="$PROJECT_DIR$/../environment.yml" beforeDir="false" afterPath="$PROJECT_DIR$/../environment.yml" afterDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/csv2json" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/csv2tsv" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/dsv2dsv" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/dsv2json" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/json2csv" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/json2dsv" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/json2tsv" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/tsv2csv" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/.bin/tsv2json" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-array/LICENSE" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-array/README.md" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-array/index.d.ts" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-array/package.json" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-axis/LICENSE" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-axis/README.md" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-axis/index.d.ts" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-axis/package.json" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-brush/LICENSE" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-brush/README.md" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-brush/index.d.ts" beforeDir="false" />
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- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-collection/README.md" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-collection/index.d.ts" beforeDir="false" />
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- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-color/README.md" beforeDir="false" />
- <change beforePath="$PROJECT_DIR$/../node_modules/@types/d3-color/index.d.ts" beforeDir="false" />
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diff --git a/Flaskserver/1.csv b/Flaskserver/1.csv
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diff --git a/Flaskserver/DailyDelhiClimateTrain.csv b/Flaskserver/DailyDelhiClimateTrain.csv
deleted file mode 100644
index aec1ea51b3113fc4c324e3831f3bafeb267858d6..0000000000000000000000000000000000000000
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-2016-12-06,18.53846153846154,69.92307692307692,2.5038461538461543,1017.9615384615385
-2016-12-07,18.25,74.35,0.925,1017.421052631579
-2016-12-08,16.9,73.3,1.7650000000000001,1016.2
-2016-12-09,19.416666666666668,68.125,1.3125,1013.4166666666666
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-2016-12-12,19.90909090909091,63.86363636363637,3.2818181818181817,1014.1818181818181
-2016-12-13,19.05,62.35,3.4300000000000006,1015.1
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-2016-12-17,17.5,63.388888888888886,6.731578947368422,1016.9473684210526
-2016-12-18,16.083333333333332,64.54166666666667,6.420833333333331,1018.0833333333334
-2016-12-19,17.857142857142858,56.095238095238095,10.414285714285715,1017.4285714285714
-2016-12-20,19.8,48.53333333333333,15.926666666666673,1015.2
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-2016-12-25,14.0,94.3,9.084999999999999,1014.35
-2016-12-26,17.142857142857142,74.85714285714286,8.784210526315787,1016.952380952381
-2016-12-27,16.85,67.55,8.335,1017.2
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-2016-12-29,15.238095238095237,87.85714285714286,6.0,1016.9047619047619
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-2016-12-31,15.052631578947368,87.0,7.325,1016.1
-2017-01-01,10.0,100.0,0.0,1016.0
diff --git a/Flaskserver/__pycache__/DBA.cpython-39.pyc b/Flaskserver/__pycache__/DBA.cpython-39.pyc
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diff --git a/Flaskserver/_lsh.cpython-38-x86_64-linux-gnu.so b/Flaskserver/_lsh.cpython-38-x86_64-linux-gnu.so
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diff --git a/Flaskserver/build/temp.linux-x86_64-3.8/locality-sensitive-hashing-visual-analytics/lsh-fast/_lsh.o b/Flaskserver/build/temp.linux-x86_64-3.8/locality-sensitive-hashing-visual-analytics/lsh-fast/_lsh.o
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diff --git a/Flaskserver/build/temp.linux-x86_64-3.9/locality-sensitive-hashing-visual-analytics/lsh-fast/lsh.o b/Flaskserver/build/temp.linux-x86_64-3.9/locality-sensitive-hashing-visual-analytics/lsh-fast/lsh.o
new file mode 100644
index 0000000000000000000000000000000000000000..a71877332290e08614b972734d14a7468dc2dd77
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diff --git a/Flaskserver/main.py b/Flaskserver/main.py
index 564080d1d92b47e955bc37d8542ef7c8eddf31d4..611733be4b3261b1064a20cc7aa6fba53a3845b5 100644
--- a/Flaskserver/main.py
+++ b/Flaskserver/main.py
@@ -94,6 +94,17 @@ def initialize():
print('LSH done: ' + str(time()-t0))
return response
+@app.route('/weights', methods=['POST'])
+def weights():
+ raw_data = orjson.loads(request.data)
+ parameters = raw_data["labels"]
+
+ # Caculate weights
+
+ response = weights
+ return response
+
+
@app.route('/update', methods=['POST'])
def update():
t0 = time()
diff --git a/Flaskserver/setup.py b/Flaskserver/setup.py
index 5396054a1a5a7cc240735bff45ed003399749448..8835fe543723a9cfe891e305c3b62ebdb48d13af 100644
--- a/Flaskserver/setup.py
+++ b/Flaskserver/setup.py
@@ -1,7 +1,7 @@
from distutils.core import setup, Extension
import numpy.distutils.misc_util
-c_ext = Extension('_lsh', ['../../lsh-fast/_lsh.cpp', '../../lsh-fast/lsh.cpp'])
+c_ext = Extension('_lsh', ['../lsh-fast/_lsh.cpp', '../lsh-fast/lsh.cpp'])
setup(
name='lsh',
diff --git a/README.md b/README.md
index e71b465004f5fc7e041d1583ff225c453dd069d7..7f48673932b6bdd4038d75fc269222cac9f44f40 100644
--- a/README.md
+++ b/README.md
@@ -10,13 +10,29 @@ The application consists of two parts:
## Setup
To run the application, make sure you've installed the following:
1. Python >=3.5: https://www.python.org/downloads/
-2. Flask: https://flask.palletsprojects.com/en/1.1.x/installation/
+2. Conda: https://docs.conda.io/projects/conda/en/latest/user-guide/install/linux.html
3. Angular: https://angular.io/guide/setup-local
-Once these are installed on your computer, simply run *run-angular.bat* to set up the client side GUI
-and *run-flask.bat* to set up the server side API
+### Step 1: Creating an environment
+All dependencies are listed in the *environment.yml* file. To create an environment, run the following command:
+`conda env create -f environment.yml`
+This will create a conda environment named *pseudo*. Now activate the environment as follows:
+`conda activate pseudo`
-The client-side bat-file should automatically open your browser and connect to http://localhost:4200/
+### Step 2: Creating the LSH package
+The LSH algorithm is maintained locally for now, so you'll have to create it manually. The file that you need to setup this package is located in the Flaskserver folder (this is more efficient when debugging, as for every change you have to rebuild the package). So the package can be created by running the following code:
+`cd Flaskserver`
+`python3 setup.py build_ext --inplace && python3 setup.py install`
+`cd ..`
+**NOTE 1**: So as a reminder, don't forget to run the 2nd line everytime you change something in the c++ code.
+
+### Step 3: Running PSEUDo
+As mentioned before, PSEUDo exists of a gui and a server. A Makefile is provided to setup both easily. Just run the following code for the server and gui respectively:
+`make server`
+`make gui`
+A browser window should automatically be opened when running the GUI. If not, visit http://localhost:4200/
+**NOTE 1**: Both gui and server will need their own terminal window.
+**NOTE 2**: Make sure the pseudo environment is activated (step 1) when running the server, otherwise you'll get ModuleNotFound errors.
# Documentation
## GUI
diff --git a/environment.yml b/environment.yml
index 58b0308f3df91cc9687068f76d0ac4d0d073779a..3ad409b42226affe0b3f4f9985608bafbaf41223 100644
--- a/environment.yml
+++ b/environment.yml
@@ -17,3 +17,5 @@ dependencies:
- pybbi
- sklearn
- cooler
+ - ucrdtw
+ - dtw-python
diff --git a/lsh-fast b/lsh-fast
new file mode 160000
index 0000000000000000000000000000000000000000..994e1549030ad71d7164ed559b5cd1ab8733ec1a
--- /dev/null
+++ b/lsh-fast
@@ -0,0 +1 @@
+Subproject commit 994e1549030ad71d7164ed559b5cd1ab8733ec1a