<html><head><meta name="color-scheme" content="light dark"></head><body><pre style="word-wrap: break-word; white-space: pre-wrap;">Bootstrap: docker
From: continuumio/miniconda3 

%labels
	Author "Wojciech Gałan"
	Maintainer papanikos_182
    Version 1.0.2
	Source https://github.com/wojciech-galan/viruses_classifier
	Publication	https://www.nature.com/articles/s41598-019-39847-2

%post
	# Update OS
    apt update &amp;&amp; apt upgrade -y

	# Install dependencies
	conda config --add channels conda-forge
	conda config --add channels default
	conda config --add channels bioconda
	conda config --add channels r
	conda update -y conda	
	
	conda create -n htp python=2.7 scipy numpy scikit-learn pip

	conda clean --all -y

	echo ". /opt/conda/etc/profile.d/conda.sh" &gt;&gt; $SINGULARITY_ENVIRONMENT
	echo "conda activate htp" &gt;&gt; $SINGULARITY_ENVIRONMENT

	. /opt/conda/etc/profile.d/conda.sh
	conda activate htp
	pip install git+https://github.com/wojciech-galan/viruses_classifier.git
	
%help
	A container for Host Taxon Predictor v0.1.2
	[https://github.com/wojciech-galan/viruses_classifier].

	To run htp help:

	$ singularity exec library://papanikos_182/default/htp:1.0.2 viruses_classifier --help
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