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VirHostMatcher-Net runs wish too

This is true, at least with the --short-contig option.

Results for wish and in the tmp dir of vhmnet are identical

$ diff -s results/SRR6797236/wish/prediction.list results/SRR6797236/vhmnet/tmp/prediction.list 
Files results/SRR6797236/wish/prediction.list and results/SRR6797236/vhmnet/tmp/prediction.list are identical

Should I

  • Completely remove the wish rules and get the output straight from vhmnet?
  • Keep it as some sort of backup?