From 5a81357ac8d4f802f999aae7b09781b63b356129 Mon Sep 17 00:00:00 2001
From: ISWB Prasetya <iswbprasetya@iswbs-mbp.home>
Date: Thu, 17 Aug 2017 11:40:08 +0200
Subject: [PATCH] start creating a new experiment, based on Wermer's original.

---
 README.md                                     |  85 ++-
 .../simple tests => examples}/2d-arrays1.java |   0
 .../simple tests => examples}/arrays.java     |   0
 .../simple tests => examples}/arrays1.java    |   0
 .../simple tests => examples}/arrays2.java    |   0
 .../simple tests => examples}/arrays3.java    |   0
 .../simple tests => examples}/loops.java      |   0
 .../simple tests => examples}/methods.java    |   0
 .../simple tests => examples}/objects.java    |   0
 .../side-effects.java                         |   0
 .../simple tests => examples}/switch.java     |   0
 .../try-catch-finally.java                    |   0
 .../wermer/Tests/simple tests/arrays1.class   | Bin 2569 -> 0 bytes
 .../{wermer => wermerOriginal}/Daikon.hs      |   0
 .../Equivalent mutations/2D_to_1D.java        |   0
 .../Equivalent mutations/BST.java             |   0
 .../Equivalent mutations/Fibonacci.java       |   0
 .../Equivalent mutations/MinsMaxs.java        |   0
 .../Mutants/2D_to_1D_no_1D.java               |   0
 .../Mutants/2D_to_1D_no_counter.java          |   0
 .../Mutants/BST_no_parent.java                |   0
 .../Mutants/Fibonacci_no_extra_prints.java    |   0
 .../Mutants/MinsMaxs_R1.java                  |   0
 .../Mutants/MinsMaxs_R2.java                  |   0
 .../Mutants/MinsMaxs_R3.java                  |   0
 .../Mutants/Normalizer_R1.java                |   0
 .../Mutants/Normalizer_R2.java                |   0
 .../Mutants/Normalizer_R3.java                |   0
 .../Mutants/Normalizer_R4.java                |   0
 .../Mutants/Stack_bool_is_result.java         |   0
 .../Stack_constructor_duplication.java        |   0
 .../Mutants/Stack_useless_property.java       |   0
 .../Mutants/Vector_R1.java                    |   0
 .../Mutants/Vector_R2.java                    |   0
 .../Mutants/Vector_R3.java                    |   0
 .../Mutants/Vectors01Generator_no_for.java    |   0
 .../Vectors01Generator_print_string.java      |   0
 .../Equivalent mutations/Normalizer.java      |   0
 .../Equivalent mutations/Stack.java           |   0
 .../Equivalent mutations/Vector.java          |   0
 .../Vectors01Generator.java                   |   0
 .../original C# code/2D_to_1D.cs              |   0
 .../original C# code/2D_to_1D_no_1D.cs        |   0
 .../original C# code/2D_to_1D_no_counter.cs   |   0
 .../original C# code/BST.cs                   |   0
 .../original C# code/BST_no_parent.cs         |   0
 .../original C# code/Fibonacci.cs             |   0
 .../Fibonacci_no_extra_prints.cs              |   0
 .../original C# code/Heapsort.cs              |   0
 .../original C# code/Matrix.cs                |   0
 .../original C# code/Stack.cs                 |   0
 .../original C# code/Stack_bool_is_result.cs  |   0
 .../Stack_constructor_duplication.cs          |   0
 .../Stack_useless_property.cs                 |   0
 .../original C# code/Vectors01Generator.cs    |   0
 .../Vectors01Generator_no_for.cs              |   0
 .../Vectors01Generator_print_string.cs        |   0
 .../Equivalent mutations/twodmatrix.class     | Bin
 .../{wermer => wermerOriginal}/Main.hs        |   0
 experiments/wermerOriginal/README.md          |  24 +
 .../Results/Daikon results.txt                |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...rue_returnValue != null_true_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 .../true_true_true_False_False_1              |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_2 |   0
 ..._returnValueVar == returnValue_True_True_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 .../arrays1_true_true_true_False_False_1      |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...rue_returnValue != null_true_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...esecantsolver_true_true_true_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...rue_returnValue != null_true_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...dientfunction_true_true_true_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 ...rue_returnValue != null_true_False_False_1 |   0
 ...eturnValueVar == returnValue_False_False_1 |   0
 .../iterator_true_true_true_False_False_1     |   0
 .../{wermer => wermerOriginal}/Settings.hs    |   0
 .../Tests/BaseSecantSolver.java               |   0
 .../Tests/GradientFunction.java               |   0
 .../Tests/Iterator.java                       |   0
 .../Tests/daikon tests/BaseSecantSolver.java  |   0
 .../Tests/daikon tests/GradientFunction.java  |   0
 .../Tests/daikon tests/Iterator.java          |   0
 .../original tests/BaseSecantSolver.java      |   0
 .../original tests/GradientFunction.java      |   0
 .../Tests/original tests/Iterator.java        |   0
 .../daikon equivalent mutations/2D_to_1D.java |   0
 .../daikon equivalent mutations/BST.java      |   0
 .../Fibonacci.java                            |   0
 .../MinsMaxs.class                            | Bin
 .../daikon equivalent mutations/MinsMaxs.java |   0
 .../Mutants/2D_to_1D_no_1D.java               |   0
 .../Mutants/2D_to_1D_no_counter.java          |   0
 .../Mutants/BST_no_parent.java                |   0
 .../Mutants/Fibonacci_no_extra_prints.java    |   0
 .../Mutants/MinsMaxs_R1.java                  |   0
 .../Mutants/MinsMaxs_R2.java                  |   0
 .../Mutants/MinsMaxs_R3.java                  |   0
 .../Mutants/Node.class                        | Bin
 .../Mutants/Normalizer_R1.class               | Bin
 .../Mutants/Normalizer_R1.java                |   0
 .../Mutants/Normalizer_R2.class               | Bin
 .../Mutants/Normalizer_R2.java                |   0
 .../Mutants/Normalizer_R3.class               | Bin
 .../Mutants/Normalizer_R3.java                |   0
 .../Mutants/Normalizer_R4.class               | Bin
 .../Mutants/Normalizer_R4.java                |   0
 .../Mutants/Program.class                     | Bin
 .../Mutants/Stack_bool_is_result.java         |   0
 .../Stack_constructor_duplication.java        |   0
 .../Mutants/Stack_useless_property.java       |   0
 .../Mutants/Tree.class                        | Bin
 .../Mutants/Vector_R1.class                   | Bin
 .../Mutants/Vector_R1.java                    |   0
 .../Mutants/Vector_R2.class                   | Bin
 .../Mutants/Vector_R2.java                    |   0
 .../Mutants/Vector_R3.class                   | Bin
 .../Mutants/Vector_R3.java                    |   0
 .../Mutants/Vectors01Generator_no_for.java    |   0
 .../Vectors01Generator_print_string.java      |   0
 .../Mutants/twodmatrix.class                  | Bin
 .../daikon equivalent mutations/Node.class    | Bin
 .../Normalizer.class                          | Bin
 .../Normalizer.java                           |   0
 .../daikon equivalent mutations/Program.class | Bin
 .../daikon equivalent mutations/Stack.java    |   0
 .../daikon equivalent mutations/Tree.class    | Bin
 .../daikon equivalent mutations/Vector.class  | Bin
 .../daikon equivalent mutations/Vector.java   |   0
 .../Vectors01Generator.java                   |   0
 .../twodmatrix.class                          | Bin
 license.txt                                   | 674 ++++++++++++++++++
 src/Javawlp/API.hs                            |   8 +-
 140 files changed, 776 insertions(+), 15 deletions(-)
 rename {experiments/wermer/Tests/simple tests => examples}/2d-arrays1.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/arrays.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/arrays1.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/arrays2.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/arrays3.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/loops.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/methods.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/objects.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/side-effects.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/switch.java (100%)
 rename {experiments/wermer/Tests/simple tests => examples}/try-catch-finally.java (100%)
 delete mode 100644 experiments/wermer/Tests/simple tests/arrays1.class
 rename experiments/{wermer => wermerOriginal}/Daikon.hs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/2D_to_1D.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/BST.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Fibonacci.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/MinsMaxs.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/2D_to_1D_no_1D.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/2D_to_1D_no_counter.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/BST_no_parent.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Fibonacci_no_extra_prints.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/MinsMaxs_R1.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/MinsMaxs_R2.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/MinsMaxs_R3.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Normalizer_R1.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Normalizer_R2.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Normalizer_R3.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Normalizer_R4.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Stack_bool_is_result.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Stack_constructor_duplication.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Stack_useless_property.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Vector_R1.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Vector_R2.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Vector_R3.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Vectors01Generator_no_for.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Mutants/Vectors01Generator_print_string.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Normalizer.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Stack.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Vector.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/Vectors01Generator.java (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/2D_to_1D.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/2D_to_1D_no_1D.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/2D_to_1D_no_counter.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/BST.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/BST_no_parent.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Fibonacci.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Fibonacci_no_extra_prints.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Heapsort.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Matrix.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Stack.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Stack_bool_is_result.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Stack_constructor_duplication.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Stack_useless_property.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Vectors01Generator.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Vectors01Generator_no_for.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/original C# code/Vectors01Generator_print_string.cs (100%)
 rename experiments/{wermer => wermerOriginal}/Equivalent mutations/twodmatrix.class (100%)
 rename experiments/{wermer => wermerOriginal}/Main.hs (100%)
 create mode 100644 experiments/wermerOriginal/README.md
 rename experiments/{wermer => wermerOriginal}/Results/Daikon results.txt (100%)
 rename experiments/{wermer => wermerOriginal}/Results/False Positives/true_returnValue != null_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/False Positives/true_returnValue != null_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/False Positives/true_returnValueVar == returnValue_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/False Positives/true_true_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/False Positives/true_true_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_False_False_2 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_True_True_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/arrays1_true_returnValueVar == returnValue_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/arrays1_true_true_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/basesecantsolver_true_returnValue != null_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/basesecantsolver_true_returnValue != null_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/basesecantsolver_true_true_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/basesecantsolver_true_true_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/gradientfunction_true_returnValue != null_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/gradientfunction_true_returnValue != null_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/gradientfunction_true_true_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/gradientfunction_true_true_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/iterator_true_returnValue != null_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/iterator_true_returnValue != null_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/iterator_true_true_returnValueVar == returnValue_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Results/iterator_true_true_true_False_False_1 (100%)
 rename experiments/{wermer => wermerOriginal}/Settings.hs (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/BaseSecantSolver.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/GradientFunction.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/Iterator.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/daikon tests/BaseSecantSolver.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/daikon tests/GradientFunction.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/daikon tests/Iterator.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/original tests/BaseSecantSolver.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/original tests/GradientFunction.java (100%)
 rename experiments/{wermer => wermerOriginal}/Tests/original tests/Iterator.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/2D_to_1D.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/BST.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Fibonacci.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/MinsMaxs.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/MinsMaxs.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/2D_to_1D_no_1D.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/2D_to_1D_no_counter.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/BST_no_parent.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Fibonacci_no_extra_prints.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/MinsMaxs_R1.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/MinsMaxs_R2.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/MinsMaxs_R3.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Node.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R1.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R1.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R2.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R2.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R3.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R3.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R4.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Normalizer_R4.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Program.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Stack_bool_is_result.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Stack_constructor_duplication.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Stack_useless_property.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Tree.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vector_R1.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vector_R1.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vector_R2.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vector_R2.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vector_R3.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vector_R3.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vectors01Generator_no_for.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/Vectors01Generator_print_string.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Mutants/twodmatrix.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Node.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Normalizer.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Normalizer.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Program.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Stack.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Tree.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Vector.class (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Vector.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/Vectors01Generator.java (100%)
 rename experiments/{wermer => wermerOriginal}/daikon equivalent mutations/twodmatrix.class (100%)
 create mode 100644 license.txt

diff --git a/README.md b/README.md
index 3cbd4cd..cd50abf 100644
--- a/README.md
+++ b/README.md
@@ -1,22 +1,79 @@
-### To run the mutation test:
+# javawlp Library
 
-- Create the mutation files using Major in the right location (described below):
-	$MAJOR_HOME/bin/javac -J-Dmajor.export.directory="$SOURCE mutants" -J-Dmajor.export.mutants=true -XMutator:ALL -cp "wlp/tests" wlp/Tests/$SOURCE.java
-- Edit settings.hs to specify the post-condition and test file
-- Run the main function (this can be done using ghci)
-- The results will be stored in wlp/Results, overwriting any existing results file that uses the same parameters (the analysis is static, so the results should be the same in this case anyway)
+javawlp is a Haskell library that implements Dijkstra's weakest pre-condition transformer that targets the Java programming language. 
+Given a statement *stmt* and a post-condition *q*, the transformer *wlp stmt q* calculates the weakest pre-condition for the statement
+to establish the post-condition q. Originally, the transformer is used in the context of a programming logic:
+to prove that a Hoare triple specification *{p} stmt {q}* is valid we can instead prove that the
+implication *p implies (wlp stmt q)* is valid. Over the years, predicate transformers are also used for other purposes,
+such as to aid software testing.
 
-### To run the false positive test:
+The weakest pre-condition of loops and recursions is unfortunately in general uncomputable. javawlp takes the pragmatic approach
+to unroll loops and recursions some finite number of times (configurable). As such, verification through javawlp falls
+in the category bounded verification.
 
-- Edit settings.hs to specify the post-condition
-- Run the testFalsePositives function (this can be done using ghci)
-- The results will be stored in wlp/Results
+Copyright (c) 2017, Utrecht University
 
-### Folder structure:
+Authors: Koen Wermer, Wishnu Prasetya
 
-The folder generated by Major must be in the same folder as the wlp folder, and must be named "SOURCE mutants" (where SOURCE is the name of the test class)
-A path to a mutant (the 5th mutant in this example) looks like this: "SOURCE mutants/5/classPath/SOURCE.java" Because of this, to analyse a new test class the classPath function in Settings.hs has to be extended with the corresponding class path
+License: GPL
+
+### How to deploy
+
+TO DO: Provide a cabal file.
+
+javawlp is distributed as a Haskell library. The main functions exported by the library can be found in the module `Javawlp.API`.
+
+Example of use:
+
+```
+module Mymodule where
+import Javawlp.API
+test = do -- parse a Java source file; specify the path to the file:
+          (tyenv,decls,methods) <- parseJava filepath  
+          configuration <- defaultConf
+          -- specify a post-condition and calculate the wlp:
+          p <- wlpMethod configuration tyenv decls (Ident methodname) (post_ "returnValue == 0")
+          -- do something with the obtained wlp (p):
+          putStrLn (prettyPrint p)
+```
+
+You can check the obtained pre-condition for its satisfiability and obtained the value assignment that
+satisfies it as shown below. This is for example useful to obtain a test case. 
+
+```
+module Mymodule where
+import Javawlp.API
+import Z3.Monad
+import Javawlp.Engine.Verifier
+import Javawlp.Engine.HelperFunctions
+test = do -- this part is as in the previous example:
+          (tyenv,decls,methods) <- parseJava filepath  
+          configuration <- defaultConf
+          p <- wlpMethod configuration tyenv decls (Ident methodname) (post_ "returnValue == 0")
+          -- now check p's satisfiability and print its model: 
+          let (result,model) = unsafeIsSatisfiable (extendEnv tyenv decls (Ident methodname)) decls p
+          case result of
+             Sat   -> do 
+                      let (Just m) = model
+                      s <- evalZ3 (modelToString m)
+                      putStrLn ("SATISFIABLE. Model: " ++ s)
+             Unsat -> putStrLn "Not satisfiable."
+             _     -> putStrLn "Unable to decide."  
+```
+
+### Content
+
+- src: contains javawlp's source files.
+- papers: includes Wermer's original thesis. 
+- examples: includes a set of small Java examples you can try as targets for the wlp transformer.
 
 ### Dependency
 
-- language-java Haskell package
\ No newline at end of file
+Haskell packages:
+
+- language-java 
+- z3 (this is not the actual z3, but provides interface to z3)
+
+Other software:
+
+- You will need the actual z3
\ No newline at end of file
diff --git a/experiments/wermer/Tests/simple tests/2d-arrays1.java b/examples/2d-arrays1.java
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diff --git a/experiments/wermer/Tests/simple tests/arrays.java b/examples/arrays.java
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diff --git a/experiments/wermer/Tests/simple tests/arrays1.java b/examples/arrays1.java
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diff --git a/experiments/wermer/Tests/simple tests/arrays3.java b/examples/arrays3.java
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diff --git a/experiments/wermer/Tests/simple tests/loops.java b/examples/loops.java
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diff --git a/experiments/wermer/Daikon.hs b/experiments/wermerOriginal/Daikon.hs
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diff --git a/experiments/wermer/Main.hs b/experiments/wermerOriginal/Main.hs
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diff --git a/experiments/wermerOriginal/README.md b/experiments/wermerOriginal/README.md
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index 0000000..c4f40c7
--- /dev/null
+++ b/experiments/wermerOriginal/README.md
@@ -0,0 +1,24 @@
+### Note
+
+Wish: this contains Wemer's orginal experiments. I have since then modified wlp's interface as well as the directory structure, 
+so the script (Main.hs and Setting.hs) as well as the instructions below need to be adjusted. TODO.
+
+### To run the mutation test:
+
+- Create the mutation files using Major in the right location (described below):
+	$MAJOR_HOME/bin/javac -J-Dmajor.export.directory="$SOURCE mutants" -J-Dmajor.export.mutants=true -XMutator:ALL -cp "wlp/tests" wlp/Tests/$SOURCE.java
+- Edit settings.hs to specify the post-condition and test file
+- Run the main function (this can be done using ghci)
+- The results will be stored in wlp/Results, overwriting any existing results file that uses the same parameters (the analysis is static, so the results should be the same in this case anyway)
+
+### To run the false positive test:
+
+- Edit settings.hs to specify the post-condition
+- Run the testFalsePositives function (this can be done using ghci)
+- The results will be stored in wlp/Results
+
+### Folder structure:
+
+The folder generated by Major must be in the same folder as the wlp folder, and must be named "SOURCE mutants" (where SOURCE is the name of the test class)
+A path to a mutant (the 5th mutant in this example) looks like this: "SOURCE mutants/5/classPath/SOURCE.java" Because of this, to analyse a new test class the classPath function in Settings.hs has to be extended with the corresponding class path
+
diff --git a/experiments/wermer/Results/Daikon results.txt b/experiments/wermerOriginal/Results/Daikon results.txt
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diff --git a/experiments/wermer/Results/False Positives/true_returnValue != null_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/False Positives/true_returnValue != null_returnValueVar == returnValue_False_False_1
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rename from experiments/wermer/Results/False Positives/true_returnValue != null_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/Results/False Positives/true_returnValue != null_true_False_False_1 b/experiments/wermerOriginal/Results/False Positives/true_returnValue != null_true_False_False_1
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diff --git a/experiments/wermer/Results/False Positives/true_returnValueVar == returnValue_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/False Positives/true_returnValueVar == returnValue_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/Results/False Positives/true_true_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/False Positives/true_true_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_False_False_2 b/experiments/wermerOriginal/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_False_False_2
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diff --git a/experiments/wermer/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_True_True_1 b/experiments/wermerOriginal/Results/arrays1_true_returnValue != null_returnValueVar == returnValue_True_True_1
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diff --git a/experiments/wermer/Results/arrays1_true_returnValueVar == returnValue_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/arrays1_true_returnValueVar == returnValue_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/Results/basesecantsolver_true_returnValue != null_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/basesecantsolver_true_returnValue != null_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/Results/basesecantsolver_true_true_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/basesecantsolver_true_true_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/Results/gradientfunction_true_returnValue != null_returnValueVar == returnValue_False_False_1 b/experiments/wermerOriginal/Results/gradientfunction_true_returnValue != null_returnValueVar == returnValue_False_False_1
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diff --git a/experiments/wermer/daikon equivalent mutations/2D_to_1D.java b/experiments/wermerOriginal/daikon equivalent mutations/2D_to_1D.java
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diff --git a/experiments/wermer/daikon equivalent mutations/Fibonacci.java b/experiments/wermerOriginal/daikon equivalent mutations/Fibonacci.java
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diff --git a/experiments/wermer/daikon equivalent mutations/MinsMaxs.class b/experiments/wermerOriginal/daikon equivalent mutations/MinsMaxs.class
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diff --git a/experiments/wermer/daikon equivalent mutations/Mutants/2D_to_1D_no_1D.java b/experiments/wermerOriginal/daikon equivalent mutations/Mutants/2D_to_1D_no_1D.java
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diff --git a/experiments/wermer/daikon equivalent mutations/Mutants/2D_to_1D_no_counter.java b/experiments/wermerOriginal/daikon equivalent mutations/Mutants/2D_to_1D_no_counter.java
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diff --git a/experiments/wermer/daikon equivalent mutations/Mutants/Vectors01Generator_no_for.java b/experiments/wermerOriginal/daikon equivalent mutations/Mutants/Vectors01Generator_no_for.java
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Mutants/Vectors01Generator_no_for.java
rename to experiments/wermerOriginal/daikon equivalent mutations/Mutants/Vectors01Generator_no_for.java
diff --git a/experiments/wermer/daikon equivalent mutations/Mutants/Vectors01Generator_print_string.java b/experiments/wermerOriginal/daikon equivalent mutations/Mutants/Vectors01Generator_print_string.java
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Mutants/Vectors01Generator_print_string.java
rename to experiments/wermerOriginal/daikon equivalent mutations/Mutants/Vectors01Generator_print_string.java
diff --git a/experiments/wermer/daikon equivalent mutations/Mutants/twodmatrix.class b/experiments/wermerOriginal/daikon equivalent mutations/Mutants/twodmatrix.class
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Mutants/twodmatrix.class
rename to experiments/wermerOriginal/daikon equivalent mutations/Mutants/twodmatrix.class
diff --git a/experiments/wermer/daikon equivalent mutations/Node.class b/experiments/wermerOriginal/daikon equivalent mutations/Node.class
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Node.class
rename to experiments/wermerOriginal/daikon equivalent mutations/Node.class
diff --git a/experiments/wermer/daikon equivalent mutations/Normalizer.class b/experiments/wermerOriginal/daikon equivalent mutations/Normalizer.class
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Normalizer.class
rename to experiments/wermerOriginal/daikon equivalent mutations/Normalizer.class
diff --git a/experiments/wermer/daikon equivalent mutations/Normalizer.java b/experiments/wermerOriginal/daikon equivalent mutations/Normalizer.java
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Normalizer.java
rename to experiments/wermerOriginal/daikon equivalent mutations/Normalizer.java
diff --git a/experiments/wermer/daikon equivalent mutations/Program.class b/experiments/wermerOriginal/daikon equivalent mutations/Program.class
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Program.class
rename to experiments/wermerOriginal/daikon equivalent mutations/Program.class
diff --git a/experiments/wermer/daikon equivalent mutations/Stack.java b/experiments/wermerOriginal/daikon equivalent mutations/Stack.java
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Stack.java
rename to experiments/wermerOriginal/daikon equivalent mutations/Stack.java
diff --git a/experiments/wermer/daikon equivalent mutations/Tree.class b/experiments/wermerOriginal/daikon equivalent mutations/Tree.class
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Tree.class
rename to experiments/wermerOriginal/daikon equivalent mutations/Tree.class
diff --git a/experiments/wermer/daikon equivalent mutations/Vector.class b/experiments/wermerOriginal/daikon equivalent mutations/Vector.class
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Vector.class
rename to experiments/wermerOriginal/daikon equivalent mutations/Vector.class
diff --git a/experiments/wermer/daikon equivalent mutations/Vector.java b/experiments/wermerOriginal/daikon equivalent mutations/Vector.java
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Vector.java
rename to experiments/wermerOriginal/daikon equivalent mutations/Vector.java
diff --git a/experiments/wermer/daikon equivalent mutations/Vectors01Generator.java b/experiments/wermerOriginal/daikon equivalent mutations/Vectors01Generator.java
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/Vectors01Generator.java
rename to experiments/wermerOriginal/daikon equivalent mutations/Vectors01Generator.java
diff --git a/experiments/wermer/daikon equivalent mutations/twodmatrix.class b/experiments/wermerOriginal/daikon equivalent mutations/twodmatrix.class
similarity index 100%
rename from experiments/wermer/daikon equivalent mutations/twodmatrix.class
rename to experiments/wermerOriginal/daikon equivalent mutations/twodmatrix.class
diff --git a/license.txt b/license.txt
new file mode 100644
index 0000000..20d40b6
--- /dev/null
+++ b/license.txt
@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
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+    under certain conditions; type `show c' for details.
+
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+parts of the General Public License.  Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
\ No newline at end of file
diff --git a/src/Javawlp/API.hs b/src/Javawlp/API.hs
index feda8bb..87fa861 100644
--- a/src/Javawlp/API.hs
+++ b/src/Javawlp/API.hs
@@ -37,7 +37,13 @@ post_ e = case parser Language.Java.Parser.exp e of
           Right e_ -> e_
           _        -> error "syntax error in post-condition"
                                                     
--- | Calculates the wlp for a given method
+-- | Calculates the wlp for a given method. Example usage:
+--
+--     do (tyenv,decls,methods) <- parseJava filepath
+--        configuration <- defaultConf
+--        p <- wlpMethod configuration tyenv decls (Ident methodname) (post_ "returnValue == 0")
+--        putStrLn (prettyPrint p)
+--
 wlpMethod :: WLPConf -> TypeEnv -> [TypeDecl] -> Ident -> Exp -> IO Exp
 wlpMethod conf env decls methodName postCondition = do
     -- Find the return type of the method
-- 
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